Genome selection in fruit breeding: application to table grapes.

Genomic selection (GS) has recently been proposed as a new selection strategy which represents an innovative paradigm in crop improvement, now widely adopted in animal breeding. Genomic selection relies on phenotyping and high-density genotyping of a sufficiently large and representative sample of the target breeding population, so that the majority of loci that regulate a quantitative trait are in linkage disequilibrium with one or more molecular markers and can thus be captured by selection. In this study we address genomic selection in a practical fruit breeding context applying it to a breeding population of table grape obtained from a cross between the hybrid genotype D8909-15 (Vitis rupestris × Vitis arizonica/girdiana), which is resistant to dagger nematode and Pierce?s disease (PD), and ?B90-116?, a susceptible Vitis vinifera cultivar with desirable fruit characteristics. Our aim was to enhance the knowledge on the genomic variation of agronomical traits in table grape populations for future use in marker-assisted selection (MAS) and GS, by discovering a set of molecular markers associated with genomic regions involved in this variation. A number of Quantitative Trait Loci (QTL) were discovered but this method is inaccurate and the genetic architecture of the studied population was better captured by the BLasso method of genomic selection, which allowed for efficient inference about the genetic contribution of the various marker loci. The technology of genomic selection afforded greater efficiency than QTL analysis and can be very useful in speeding up the selection procedures for agronomic traits in table grapes.

Marker-assisted selection integrated to the embrapa common bean breeding program.

The establishment of a specific Marker-Assisted Selection Facility at the Embrapa Rice and Beans Biotechnology Laboratory, in 2014, has better supported the routine analysis with molecular markers demanded by the Embrapa Common Bean Breeding Program. In addition, it has also supported other Embrapa plant breeding programs, such as rice and cotton.

Rendimento de grãos e componentes primários de rendimento de híbridos de girassol em campo novo de parecis, na segunda safra do verão de 2015.

RESUMO: O objetivo deste trabalho foi avaliar rendimento de grãos e componentes primários de rendimento de híbridos de gIrassol em Campo Novo do Parecis, na segunda safra do verão de 2015. O estudo foi realizado no campo experimental do Instituto Federal de Educação, Ciência e Tecnologia de Mato Grosso ? campus Campo Novo do Parecis, entre os meses de fevereiro e junho de 2015. Foram analisados 13 tratamentos (híbridos), em delineamento de blocos casualizados, com 4 repetições. Foram avaliadas as seguintes características: tamanho do capitulo, massa de capítulo, massa de aquênios por capítulo, índice de colheita, massa de mil aquênios e produtividade de aquênios. Os dados foram submetidos à análise de variância e ao teste de média Scott-Knott (p<0,05). O híbrido BRS G44 apresentou os melhores resultados para rendimento de grãos e seus componentes primários avaliados na segunda safra de verão de 2015, em Campo Novo do Parecis. Assim, este híbrido pode ser uma opção de cultivo na região.

Desempenho de genótipos de girassol no cerrado do leste Maranhense, ano agrícola 2013/2014.

RESUMO: No ano agrícola 2013/2014, foram conduzidos três ensaios de avaliação de genótipos de girassol, sendo dois no município de Mata Roma e um em Magalhães de Almeida, com o objetivo de identificar materiais promissores para produção de grãos e óleo. O espaçamento utilizado foi de 0,70 m entre linhas com plantas distanciadas de 0,30 m. A adubação de fundação constou de 200 kg ha-1 da fórmula 05-30-15 + micronutrientes e cobertura aos 30 dias após semeadura, usando-se 30 kg ha-1 de N e 30 kg ha-1 de K2O. Em Mata Roma, a produtividade de grãos no ensaio final 01 variou de 1.866 kg ha-1 a 2.567 kg ha-1, obtida nos genótipos Embrapa 122 e BRS G34, respectivamente, ficando a média geral do ensaio em 2.095 kg ha-1. No ensaio final 02 a produtividade de grãos variou de 1.705 kg ha-1 a 2.036 kg ha -1 para os genótipos Helio 250 e MG 360, REspectivamente, com média geral de 1.834 kg ha-1. Em Magalhães de Almeida a produtividade de grãos obtida no ensaio final constou de 1.600 kg ha-1 no genótipo Helio 251, 2.110 kg ha-1 no CF 101 e média Geral do ensaio de 1.908 kg ha -1. Os maiores teores de óleo obtidos nos três ensaios foram 40,1%, 40,6%, 40,9% e 41,4%, respectivamente, nos genótipos CF 101, Paraíso 20, BRS G41 e MG 360. ABSTRACT: In the agricultural year 2013/2014, three sunflowers genotypes tests were conducted in the state of Maranhão: two in the county of Mata Roma and one in Magalhães de Almeida, in order to identify promising materials for the production of grain and oil. The spacing used was 0.70 m between rows with plants spaced of 0.30 m. The foundation of fertilization consisted of 200 kg ha-1 formula 05-30-15 + micro-nutrient and coverage on 30 days after sowing, using 30 kg ha-1 of N and 30 kg ha-1 of K2O. In Mata Roma, grain yield in the final test 01 ranged from 1,866 kg ha-1 to 2,567 kg ha-1, obtained at Embrapa 122 and BRS G34 genotypes, respectively, getting the overall average of the test in 2,095 kg ha-1. In the final test 02, the grain yield ranged from 1,705 kg ha-1 to 2,036 kg ha-1 for Helio 250 and MG 360 genotypes, respectively, with overall average of 1,834 kg ha-1. In Magalhães de Almeida the grain yield obtained in the final test consisted of 1,600 kg ha-1 in the genotype Helio 251, 2,110 kg ha-1 in the CF 101 and overall average test of 1,908 kg ha-1. The highest oil content obtained in the three tests were 40.1%, 40.6%, 40.9% and 41.4%, respectively, in the 101 CF genotypes, Heaven 20, BRS G41 and MG 360.

Adaptação climática de progênies de Pinus spp oriundas de polinização controlada.

2015

Tamanho efetivo populacional e diversidade genética em progênies de Pinus caribaea var. hondurensis.

2015

Desempenho inicial em crescimento de Cordia trichotoma em teste de progênies.

2015

Selection between and within full-sib sugarcane families using the modified BLUPIS method (BLUPISM).

2016

Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB.

2014

Juvenile-mature genetic correlations in Pinus taeda clones propagated via somatic embryogenesis.

Objetivou-se com o presente trabalho, estimar a correlação genética entre idades de seleção (juvenil-adulta) e eficiência da seleção precoce para as características altura, diâmetro e volume de indivíduos de famílias de Pinus taeda propagados via embriogênese somática. O estudo foi realizado por meio de análise genético-estatística pelo procedimento de estimação de componentes de variância (Reml) e de predição de valores genéticos (Blup), usando-se o software Selegen-Reml/Blup. As correlações genéticas entre idades juvenis e idade de rotação foram realizadas aplicando o modelo linear desenvolvido por Lambeth (1980). Segundo os resultados do modelo estabelecido, a seleção precoce pode ser realizada em clones de Pinus taeda com alta eficiência de seleção. As idades de 4 a 6 anos são suficientes para selecionar clones de Pinus taeda propagados via embriogênese somática para colheita aos 8 e 12 anos e, as idades de 6 a 10 anos são suficientes para selecionar para colheita aos 20 anos. De acordo com as estimativas de correlação genotípicaa partir dos ambientes, a seleção de clones de Pinus taeda propagados via embriogênese somática deve ser praticada de forma específica para cada ambiente. Pode-se realizar a seleção de clones considerando o diâmetro, visto a alta correlação observada entre volume e diâmetro.

Predictive ability of Genomic Estimated Family Values (GEFV).

Genomic selection (GS) has been used to compute genomic estimated breeding values (GEBV) of individuals; however, it has only been applied to animal and major plant crops due to high costs. Besides, breeding and selection is performed at the family level in some crops. We aimed to study the implementation of genome-wide family selection (GWFS) in two loblolly pine (Pinus taeda L.) populations: i) the breeding population CCLONES composed of 63 families (5-20 individuals per family), phenotyped for four traits (stem diameter, stem rust susceptibility, tree stiffness and lignin content) and genotyped using an Illumina Infinium assay with 4740 polymorphic SNPs, and ii) a simulated population that reproduced the same pedigree as CCLONES, 5000 polymorphic loci and two traits (oligogenic and polygenic). In both populations, phenotypic and genotypic data was pooled at the family level in silico. Phenotypes were averaged across replicates for all the individuals and allele frequency was computed for each SNP. Marker effects were estimated at the individual (GEBV) and family (GEFV) levels with Bayes-B using the package BGLR in R and models were validated using 10-fold cross validations. Predicted ability, computed by correlating phenotypes with GEBV and GEFV, was always higher for GEFV in both populations, even after standardizing GEFV predictions to be comparable to GEBV. Results revealed great potential for using GWFS in breeding programs that select families, such as most outbreeding forage species. A significant drop in genotyping costs as one sample per family is needed would allow the application of GWFS in minor crops.

Divergência genética entre progênies de polinização aberta de Pinus caribaea var. hondurensis a partir de caracteres quantitativos.

Este trabalho foi realizado com o objetivo de estimar a divergência genética entre progênies de Pinus caribaea var. hondurensis, por meio de caracteres quantitativos. O experimento foi instalado em delineamento látice 10 x 10, triplo, com 100 tratamentos (96 progênies oriundas de polinização aberta de um pomar clonal da espécie e quatro testemunhas). Foram avaliados os caracteres: diâmetro a 1,30 m do solo, altura total de planta, volume cilíndrico, produção de resina total e resina por área de painel. Utilizou-se a distância generalizada de Mahalanobis (D2) e o método de otimização de Tocher. A maior distância genética observada entre as progênies foi de 100% (D2 = 65,51) e a menor foi de 0,09% (D2 = 0,15). O caractere volume foi o que mais contribuiu para a divergência genética entre os grupos avaliados. O agrupamento a partir do método de otimização de Tocher possibilitou a separação das progênies em quatro grupos, com concentração de 96,9% das progênies em um único grupo. Para que estas progênies possam ser incluídas em programas de melhoramento genético para produção de resina e madeira, cruzamentos controlados deverão ser priorizados entre indivíduos mais produtivos, que apresentaram maior divergência genética.

Comparing pollination control bag types for sorghum seed harvest.

Efficacy of pollination bags made of new nonwoven fabrics was compared with the traditional paper bags in sorghum during 2015 using three cultivars comprising BR007B (red seeded), SC283 (white seeded) and 1167048 hybrid with tannin (brown seeded). The five pollination bag treatments were: no bagging, traditional paper bag, paper bag plus plastic screen bag for extra bird protection, duraweb®SG2 polypropylene bag and duraweb®SG1 polyester bag. There was no bird damage on tannin hybrid but birds damaged bags to access grains of the other two varieties. Varieties and bag types differed significantly, and also showed significant interactions for panicle weight (at P<0.06), seed weight and average seed weight per panicle. The tannin hybrid was consistently a better performer for all traits regardless of bag type. The paper bags were the worst for bird damage. Duraweb® SG1 was the best performer for all traits including bird damage followed by duraweb®SG2. The joint regression analysis showed that BR007B performed consistently under all bag types with average response. On the other hand, SC283 improved its response with the increasing quality of bag type at an above average rate for panicle weight and seed traits. It was concluded that new nonwoven fabric bags could replace paper bags in providing better seed production potential and greater protection against bird damage.

Adaptability and phenotypic stability of soybean cultivars for grain yield and oil content.

ABSTRACT. The aim of this study was to verify the adaptability and stability of soybean cultivars with regards to yield and oil content. Data of soybean yield and oil content were used from experiments set up in six environments in the 2011/12 and 2012/13 crop seasons in the municipalities of Patos de Minas, Uberaba, Lavras, and São Gotardo, Minas Gerais, Brazil, testing 36 commercial soybean cultivars of both conventional and transgenic varieties. The Wricke method and GGE biplot analysis were used to evaluate adaptability and stability of these cultivars. Large variations were observed in grain yield in relation to the different environments studied, showing that these materials are adaptable. The cultivars exhibited significant differences in oil content. The cultivars BRSGO204 (Goiânia) and BRSMG (Garantia) exhibited the greatest average grain yield in the different environments studied, and the cultivar BRSMG 760 SRR had the greatest oil content among the cultivars evaluated. Ecovalence was adopted to identify the most stable cultivars, and the estimates were nearly uniform both for grain yield and oil content, showing a variation of 0.07 and 0.01%, respectively. The GGE biplot was efficient at identifying cultivars with high adaptability and phenotype stability.

Natural variation in expression of genes associated with carotenoid biosynthesis and accumulation in cassava (Manihot esculenta Crantz) storage root.

ABSTRACT: BACKGROUND: Cassava (Manihot esculenta Crantz) storage root provides a staple food source for millions of people worldwide. Increasing the carotenoid content in storage root of cassava could provide improved nutritional and health benefits. Because carotenoid accumulation has been associated with storage root color, this study characterized carotenoid profiles, and abundance of key transcripts associated with carotenoid biosynthesis, from 23 landraces of cassava storage root ranging in color from white-to-yellow-to-pink. This study provides important information to plant breeding programs aimed at improving cassava storage root nutritional quality. RESULTS: Among the 23 landraces, five carotenoid types were detected in storage root with white color, while carotenoid types ranged from 1 to 21 in storage root with pink and yellow color. The majority of storage root in these landraces ranged in color from pale-to-intense yellow. In this color group, total ß-carotene, containing all-E-, 9-Z-, and 13-Z-ß-carotene isomers, was the major carotenoid type detected, varying from 26.13 to 76.72 %. Although no ?-carotene was observed, variable amounts of a ?-ring derived xanthophyll, lutein, was detected; with greater accumulation of ?-ring xanthophylls than of ß-ring xanthophyll. Lycopene was detected in a landrace (Cas51) with pink color storage root, but it was not detected in storage root with yellow color. Based on microarray and qRT-PCR analyses, abundance of transcripts coding for enzymes involved in carotenoid biosynthesis were consistent with carotenoid composition determined by contrasting HPLC-Diode Array profiles from storage root of landraces IAC12, Cas64, and Cas51. Abundance of transcripts encoding for proteins regulating plastid division were also consistent with the observed differences in total ß-carotene accumulation. CONCLUSIONS: Among the 23 cassava landraces with varying storage root color and diverse carotenoid types and profiles, landrace Cas51 (pink color storage root) had low LYCb transcript abundance, whereas landrace Cas64 (intense yellow storage root) had decreased HYb transcript abundance. These results may explain the increased amounts of lycopene and total ß-carotene observed in landraces Cas51 and Cas64, respectively. Overall, total carotenoid content in cassava storage root of color class representatives were associated with spatial patterns of secondary growth, color, and abundance of transcripts linked to plastid division. Finally, a partial carotenoid biosynthesis pathway is proposed.